JBrowse 2
JBrowse 2 is a modular, open-source genome browser that provides interactive visualization of genomic data, supporting diverse data types and extensible through a plugin ecosystem.
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Free
Visualize genomic data from various file formats (BAM, CRAM, VCF, GFF, BED, BigWig).
Display genome annotations and features.
Compare genome structures using dotplots and synteny views.